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Publications
Book Chapters
[2] Borazjani, I. and Akbarzadeh, A. (2019). Large-eddy simulations of flows with moving boundaries". In Modeling and Simulation of Turbulent Mixing and Reaction: For Power, Energy and Flight Editors: Daniel Livescu, Francine Battaglia and Peyman Givi, 201-225.
[1] Sotiropoulos, F., Aidun, C., Borazjani, I. and MacMeccan, R. (2010). Computational Techniques for Biological Flows: From blood-vessel scale hemodynamics to blood cells. In Modeling and Imaging in the cardiovascular system eds. H. S. Udaykumar and K. B. Chandran.
Journal Publications
[59] Simmons2, T., Daghooghi1, M. and Borazjani, I. (2023). Dynamics of non-spherical particles resting on a flat surface in a viscous fluid. Physics of Fluids, 35. 043334, DOI: 10.1063/5.0145221
[58] Ogunka2, U., Akbarzadeh2, A. M., and Borazjani, I. (2023) Mechanisms of Morphing Wall Flow Control by Traveling Waves over a Thick Airfoil. AIAA Journal, 61(4), 1687-1707 DOI: 10.2514/1.J062449
[57] Manjunathan2, S.A., and Borazjani, I. (2022) Flow induced vibration of a circular cylinder with an attached elastic plate of high aspect ratio. Physics of Fluids, 34(11), 113606 DOI: 10.1063/5.0120428
[56] Kim2, T., Hedayat2, M., Vaitkus, V., Belohlavek, M., Krishnamurthy, V. and Borazjani, I. (2022). A learning-based, region of interest-tracking algorithm for catheter detection in echocardiography. Computerized Medical Imaging and Graphics, DOI: 10.1016/j.compmedimag.2022.102106
[55] Asadi2, H., and Borazjani, I. (2022). The effects of implantation orientation of a bileaflet mechanical heart valve in an anatomic left ventricle-aorta configuration. Journal of biomechanical Engineering. BIO-21-1436. DOI: 10.1115/1.4054411
[54] Hedayat2, M., Akbarazadeh2, A., and Borazjani, I. (2022). A parallel dynamic overset grid framework for immersed boundary methods. Computers and Fluids, 239(15), 105378. DOI: 10.1016/j.compfluid.2022.105378
[53] Soltany Sadrabadi, M., Hedayat2, M., Borazjani, I., and Arzani, A. (2021) Fluid-structure coupled biotransport processes in aortic valve disease. Journal of biomechanics, 117, 110239. DOI: 10.1016/j.jbiomech.2021.110239
[52] Daghooghi1, M. and Borazjani, I. (2021). A kinematics-based model for the settling of gravity-driven arbitrary-shaped particles on a surface. PLoS ONE, 16(2), e0243716. DOI: 10.1371/journal.pone.0243716
[51] Kim2, T., Hedayat2, M., Vaitkus, V., Belohlavek, M., Krishnamurthy, V. and Borazjani, I. (2020). Automatic Segmentation of the Left Ventricle in Echocardiographic Images Using Convolutional Neural Networks. Quantitative Imaging in Medicine and Surgery, DOI: 10.21037/qims-20-745
[50] Borazjani, I. (2020). A Sharp-Interface Immersed Boundary Method for Compressible Flows with Shock-Particle Interaction. AIAA Journal, 59(4), 1169-1183 doi: 10.2514/1.J059626.
[49] Akbarazadeh2, A., and Borazjani, I. (2020). Controlling flow separation on a thick airfoil using backward traveling waves. AIAA Journal, DOI: 10.2514/1.J059428
[48] Hedayat2, M., Patel2, T., Kim2, T., Hoffmann, K. R., Belohlavek, M., and Borazjani, I. (2020). A hybrid echocardiography-computational fluid dynamics framework for ventricular flow simulations. International Journal for Numerical Methods in Biomedical Engineering . DOI: 10.1002/CNM.3352
[47] Borazjani, I. (2020). Numerical Simulations of Copepods: Challenges and Future Directions. Fluids, 5(2), 52, DOI: 10.3390/fluids5020052.
[46] Asgharzadeh1, H., Shahmohammadi1, A., Varble, N., Levy, E., Meng, H., and Borazjani, I. (2020). A Simple Flow Classification Parameter Can Discriminate Rupture Status in Intracranial Aneurysms. Neurosurgery, , DOI: 10.1093/neuros/nyaa189
[45] Ogunka2, U., Daghooghi1, M., Akbarazadeh2, A., and Borazjani, I. (2020) The ground effect in anguiliform swimming. Biomimetics, 5(1), 9 DOI: 10.3390/biomimetics5010009.
[44] Akbarazadeh2, A., and Borazjani, I. (2019). Large eddy simulations of a turbulent channel flow with a deforming wall undergoing high steepness traveling waves. Physics of Fluids, 31, 125107 DOI: 10.1063/1.5131268.
[43] Akbarzadeh2, A., and Borazjani, I. (2019). Controlling flow separation on an inclined plate via traveling waves. Journal of Fluid Mechanics, 880, 831-863 DOI:10.1017/jfm.2019.705
[42] Asgharzadeh, Asadi, H., H., Meng, H., and Borazjani, I. (2019). A Non-dimensional Parameter for Classification of the Flow in Intracranial Aneurysms II: Patient-Specific Geometries. Physics of Fluids 31, 031905 DOI: 10.1063/1.5081451 (Featured Article)
[41] Asgharzadeh, H., and Borazjani, I. (2019). A Non-dimensional Parameter for Classification of the Flow in Intracranial Aneurysms I: Simplified Geometries. Physics of Fluids 31, 031904 DOI: 10.1063/1.5033942 (Featured Article)
[40] Hedayat, M., and Borazjani, I. (2019). Comparison of platelet activation through hinge vs bulk flow in bileaflet mechanical heart valves. 83, 280-290 DOI: 10.1016/j.jbiomech.2018.12.003
[39] Asadi, H., Asgharzadeh, H., and Broazjani, I. (2018). On the scaling of propagation of periodically generated vortex rings. Journal of Fluid Mechanics 853, 150-170 DOI: 10.1017/jfm.2018.529 click here
[38] Daghooghi, M. and Borazjani, I. (2018). The effects of irregular shape on the particle stress of dilute suspensions. Journal of Fluid Mechanics 839, 663-592 DOI: 10.1017/jfm.2018.65
[37] Hedayat, M.,Asgharzadeh, H., and Borazjani, I. (2017). Platelet activation of mechanical versus bioprosthetic heart valves during systole. Journal of Biomechanics, 56, 111-116 DOI: 10.1016/j.jbiomech.2017.03.002 click here
[36] Daghooghi, M. and Borazjani, I. (2017). The effect of undulations on the particle stress in dilute suspensions of rod-like particles. European Journal of Computational Mechanics, 26 (1,2), 61-77 DOI: 10.1080/17797179.2017.1321204 click here
[35] Asgharzadeh, H. and Borazjani, I. (2016). A Newton-Krylov method with an approximate analytical Jacobian for implicit solution of Navier-Stokes equations on staggered overset-curvilinear grids with immersed boundaries. Journal of Computational Physics, 331(15) 227-256 DOI: 10.1016/j.jcp.2016.11.033 click here
[34] Asgharzadeh, H. and Borazjani, I. (2016). Effects of Reynolds and Womersley numbers on the hemodynamics of intracranial aneurysms. Computational and Mathematical Methods in Medicine, 2016, 7412926 DOI: 10.1155/2016/7412926 click here
[33] Daghooghi, M. and Borazjani, I. (2016). Self-Propelled Swimming Simulations of Bio-inspired Smart Structures. Bioinspiration & Biomimetics 11 (5), 056001 DOI:10.1088/1748-3190/11/5/056001 click here
[32] Bottom, R.G., Borazjani, I., Belevins, E., and Lauder, G.V. (2016). Hydrodynamics of swimming in stingrays: Numerical simulations and the role of the leading edge vortex. Journal of Fluid Mechanics 788, 407-443 DOI:10.1017/jfm.2015.702.
[31] Rajan, N. K., Song, Z., Hoffmann, K. R., Belohlavek, M., McMahon, E. R., and Borazjani, I. (2015). 3D reconstruction of the left ventricle from multiple-axis echocardiography. ASME Journal of Biomechanical Engineering 138(1), 011003-12 DOI: 10.1115/1.4031976.
[30] Daghooghi, M. and Borazjani, I. (2015). The Hydrodynamic Advantages of Synchronized Swimming in Rectangular Patterns. Bioinspiration & Biomimetics 10 (5), 056018 DOI: 10.1088/1748-3190/10/5/056018.
[29] Song, Z. and Borazjani, I. (2015). The Role of Shape and Heart-rate on the Performance of the Left Ventricle. ASME Journal of Biomechanical Engineering, 137 (11), 114501-114501-6 DOI: 10.1115/1.4031468.
[28] Daghooghi, M. and Borazjani, I. (2015). The influence of inertia on the rheology of a periodic suspension of neutrally buoyant rigid ellipsoids. Journal of Fluid Mechanics 781, 506-549.
[27] Borazjani, I. (2015). Simulations of Unsteady Aquatic Locomotion: From unsteadiness in straight-line swimming to fast-starts. Integrative and Comparative Biology, (1-2)1-13, DOI: 10.1093/icb/icv015.
[26] Borazjani, I. (2015). A review of fluid-structure interaction simulations of Prosthetic Heart Valves. Journal of Long-term Effects of Medical Implants, Special Issue on Heart Valves 25(1-2), 75-93
[25] Borazjani, I., Westerdale, J., McMahon, E., Rajaraman, P. K., Heys, J., and Belohlavek, M. (2013). Left Ventricular Flow Analysis: Recent Advances in Numerical Methods and Applications in Cardiac Ultrasound. Computational and Mathematical Methods in Medicine, Special Issue: Computational Analysis of Coronary and Ventricular Hemodynamics 2013, 395081-11 DOI:10.1155/2013/395081. click here (Open Access)
[24] Borazjani, I., Le, T., Ge, L. and Sotiropoulos, F. (2013). An overset immersed boundary framework for simulating complex 3D incompressible flows. Computers and Fluids 77, 76-96 DOI:10.1016/j.compfluid.2013.02.017. click here
[23] Borazjani, I. (2013). Fluid-Structure Interaction, Immersed Boundary-Finite Element Method Simulations of Bio-prosthetic Heart Valves. Computer Methods in Applied Mechanics and Engineering 257, 103-116 DOI:10.1016/j.cma.2013.01.010. click here
[22] Borazjani, I. (2013). The functional role of caudal and anal/dorsal fins during the C-start of a bluegill sunfish. Journal of Experimental Biology 216, 1658-1669 DOI:10.1242/jeb.079434. click here
[21] Borazjani, I. and Daghooghi, M. (2013). The fish tail motion forms an attached leading edge vortex Proceedings of the Royal Society B 280(175), 20122071. click here
[20] Kang, S., Borazjani, I. , Colby, J.A., and Sotiropoulos, F.(2012). Numerical simulation of 3D fow past a real-life marine hydrokinetic turbine. Advances in Water Resources 39, 33-43.
[19] Coffey, D., Malbraaten, N., Le, T., Borazjani, I. , Sotiropoulos, F., Erdman, A. G., and Keefe, D. F. (2012). Interactive Slice WIM: Navigating and Interrogating Volume Datasets Using a Multi-Surface, Multi-Touch VR Interface. IEEE Transactions on Visualization and Computer Graphics PP(99), DOI:10.1109/TVCG.2011.283. click here
[18] Borazjani, I. , Sotiropoulos, F., Tytell, E.D. and Lauder, G.V. (2012). On the hydrodynamics of the bluegill sunfish c-start escape response: three-dimensional simulations and comparison with experimental data. Journal of Experimental Biology 215, 671-684.
[17] Le, T., Borazjani, I. , Kang, S., and Sotiropoulos, F. (2011). On the structure of vortex rings from inclined nozzles. Journal of Fluid Mechanics 686, 451-483.
[16] Behara, S., Borazjani, I. and Sotiropoulos, F. (2011). Vortex-induced vibrations of an elastically mounted sphere with three degrees of freedom at Re = 300: Hysteresis and vortex shedding modes Journal of Fluid Mechanics 686, 426-450.
[15] Khosronejad, A., Kang, S., Borazjani, I. , and Sotiropoulos, F. (2011). Curvilinear Immersed Boundary Method For Simulating Flow/Bed Morphodynamic Interaction due to Sediment Transport Phenomena. Advances in Water Resources 34(7), 829-843.
[14] Le, T., Borazjani, I., and Sotiropoulos, F. (2010). Pulsatile Flow Effects on the Hemodynamics of Intracranial Aneurysms. ASME Journal of Biomechanical Engineering 132(11), 111009-11 DOI:10.1115/1.4002702 click here.
[13] Keefe, D.F., Sotiropoulos, F., Interrante, V., Birali Runesha, H., Coffey, D., Staker, M., Chi-Lun Lin, C., Sun, Y., Borazjani, I., Le, T., Rowe, N., and Erdman, A. (2010). A Process for Design, Verification, Validation, and Manufacture of Medical Devices using Immersive VR Environments. ASME Journal of Medical Devices 4(4), 045002-6. DOI:10.1115/1.4002561. click here.
[12] Borazjani, I. and Sotiropoulos, F. (2010). The effect of implantation orientation of a bi-leaflet mechanical heart valve on kinematics and hemodynamics in an anatomic aorta. ASME Journal of Biomechanical Engineering 132(11), 111005-8 DOI:10.1115/1.4002491 click here
[11] Tytell, E., Borazjani, I. , Sotiropoulos, F., Baker, T. V., Anderson, E. J. and Lauder, G. V. (2010). Disentangling the functional roles of morphology and motion in fish swimming. Integrative and Comparative Biology DOI:10.1093/icb/icq057 click here
[10] Borazjani, I. and Sotiropoulos, F., Malkiel, E., Katz, J. (2010). On the role of copepod antenna in the production of hydrodynamic force during hopping. Journal of Experimental Biology 213, 3019-3035.
[9] Simon, H. A., Ge, L., Borazjani, I., Sotiropoulos, F. and Yoganathan, A. P. (2010). Simulation of the three-dimensional hinge flow fields of a bileaflet mechanical heart valves under physiologic conditions. Annals of Biomedical Engineering 38, 1257 DOI: 10.1007/s10439-010-9913-9. click here
[8] Borazjani, I. and Sotiropoulos, F. (2010). On the role of form and kinematics on the hydrodynamics of body/caudal fin swimming. Journal of Experimental Biology 213, 89-107. (Featured on Inside JEB) click here
[7] Borazjani, I., Ge, L. and Sotiropoulos, F. (2010). High resolution fluid-structure interaction simulations of flow through a bi-leaflet mechanical heart valve in an anatomic aorta. Annals of Biomedical Engineering38(2), 326-344 DOI: 10.1007/s10439-009-9807-x. click here
[6] Borazjani, I. and Sotiropoulos, F. (2009). Why don't mackerels swim like eels? The role of form and kinematics on the hydrodynamics of undulatory swimming. Physics of Fluids 21, 091109. (Winner of Gallery of Fluid Motion 2009) click here
[5] Sotiropoulos, F. and Borazjani, I. (2009). A review of the state-of-the-art numerical methods for simulating flow through mechanical heart valves. Medical & Biological Engineering & Computing 47, 245�256.(Open Access)
[4] Borazjani, I. and Sotiropoulos, F. (2009). Numerical investigation of the hydrodynamics of anguilliform swimming in the transitional and inertial flow regimes. Journal of Experimental Biology 212, 576-592. (Cover Story) click here
[3] Borazjani, I. and Sotiropoulos, F. (2009). Vortex-induced vibrations of two cylinders in tandem in the proximity-wake interference region. Journal of Fluid Mechanics 621, 321-364.
[2] Borazjani, I. and Sotiropoulos, F. (2008). Numerical investigation of the hydrodynamics of carangiform swimming in the transitional and inertial flow regimes. Journal of Experimental Biology 211, 1541-1558.
[1] Borazjani, I., Ge, L. and Sotiropoulos, F. (2008). Curvilinear immersed boundary method for simulating fluid structure interaction with complex 3D rigid bodies. Journal of Computational physics 227, 7587-7620.
Peer Reviewed Conference Proceedings and Abstracts
[23] Ogunka2, U., and Borazjani, I. (2023) Effect of Reynolds Number on Traveling Wave Flow Control. In AIAA Scitech 2023 Forum. Paper 2023-2137. DOI: 10.2514/6.2023-2137
[22] Akbarazadeh2, A., and Borazjani, I. (2022) Large eddy Simulation of turbulent compressible wavy channels. In AIAA SciTech 2022 Forum. Paper 2022-0481. DOI: 10.2514/6.2022-0481
[21] Ogunka2, U., Akbarzadeh2, A. M., and Borazjani, I. (2022) Flow control with traveling-wave surface morphing at post-stall angles of attack. In AIAA Scitech 2022 Forum. Paper 2022-1948. DOI: 10.2514/6.2022-1948
[20] Akbarazadeh2, A., and Borazjani, I. (2021) A compressible LES with immersed boundary method. In AIAA SciTech 2021 Forum. Paper 3456462. DOI: 10.2514/6.2021-2008
[19] Ogunka2, U., Akbarzadeh2, A. M., and Borazjani, I. (2021) Role of amplitude and wavelength on flow control by traveling waves. In AIAA Scitech 2021 Forum. Paper 3456383. DOI: 10.2514/6.2021-2005
[18] Akbarazadeh2, A., and Borazjani, I. (2019) A numerical study on controlling flow separation via surface morphing in the form of backward traveling waves. In AIAA Aviation 2019 Forum. DOI: 10.2514/6.2019-3589
[17] Bani-Hani, M., Borazjani, I., Esfahani, E., Krovi, V., and Karami, A. (2015) Generation and optimization of traveling vibrating waves in self-assembling swimming smart boxes. In ASME 2015 International Design and Engineering Technical Conferences & Computers and Information in Engineering Conference (IDETC/CIE 2015), August 2-5, 2015, in Boston, MA, pp. DETC2015-47681.
[16] Daghooghi2, M., Borazjani, I., Karami, A., and Esfahani, E. (2014). Self-propelled swimming simulations of self-assembling smart boxes. In Proceedings of the ASME 2014 Smart Materials, Adaptive Structure and Intelligent Systems (SMASIS 2014), September 8-10, 2014, in New Port, Rhode Island, USA, pp. SMASIS2014-7654.
[15] Karami, A., Esfahani, E., Daghooghi2, M., and Borazjani, I. (2014). Self-assembling swimming smart boxes. In Proceedings of the ASME 2014 Smart Materials, Adaptive Structure and Intelligent Systems (SMASIS 2014), September 8-10, 2014, in New Port, Rhode Island, USA, pp. SMASIS2014-7533.
[14] Asgharzadeh2, H., Borazjani, I., Xia, J., and Meng, H. (2014). Vortex generation in two intracranial aneurysms. In ASME 2014 International Design and Engineering Technical Conferences & Computers and Information in Engineering Conference (IDETC/CIE 2014), August 17-20, 2014, in Buffalo, NY, pp. DETC2014-3703.
[13] Vruddhula3, V., and Borazjani, I. (2014). 3D Flow Simulations of a Simplified Right Ventricle Model. In ASME 2014 International Design and Engineering Technical Conferences & Computers and Information in Engineering Conference (IDETC/CIE 2014), August 17-20, 2014, in Buffalo, NY, pp. DETC2014-35476.
[12] Madduri2, B., and Borazjani, I. (2014). Aerodynamic Design of Flat Delta Kite based on Polhamus Concept of Leading Edge Suction Analogy. In ASME 2014 International Design and Engineering Technical Conferences & Computers and Information in Engineering Conference (IDETC/CIE 2014), August 17-20, 2014, in Buffalo, NY, pp. DETC2014-35097.
[11] Rajan2, N. K., Song2, Z., Hoffmann, K. R., Belohlavek, M., McMahon, E. R., and Borazjani, I. (2014). 3D reconstruction of the left ventricle from four echocardiographic projections. In ASME 2014 International Design and Engineering Technical Conferences & Computers and Information in Engineering Conference (IDETC/CIE 2014), August 17-20, 2014, in Buffalo, NY, pp. DETC2014-34463.
[10] Grigoriev2, E., and Borazjani, I. (2014). NREL phase VI wind turbine modeling using an unsteady panel method. In ASME 2014 International Design and Engineering Technical Conferences & Computers and Information in Engineering Conference (IDETC/CIE 2014), August 17-20, 2014, in Buffalo, NY, pp. DETC2014-34141.
[9] Daghooghi2, M., and Borazjani, I. (2014). Parallel Implementation of Periodic Boundary Conditions for a Curvilinear Immersed Boundary Method. In ASME 2014 International Design and Engineering Technical Conferences & Computers and Information in Engineering Conference (IDETC/CIE 2014), August 17-20, 2014, in Buffalo, NY, pp. DETC2014-34069.
[8] Daghooghi2, M., and Borazjani, I. (2014). An Immersed Boundary Method for Calculating the Relative Viscosity of Dilute Suspension of Rigid Spheres. In ASME 2014 International Design and Engineering Technical Conferences & Computers and Information in Engineering Conference (IDETC/CIE 2014), August 17-20, 2014, in Buffalo, NY, pp. DETC2014-34061.
[7] Borazjani, I. (2013). Fluid-structure interaction simulations of tissue heart valves with a calcified leaflet using immersed boundary-finite element method. In Heart Valve Modeling Symposium, at the 3rd International Conference on Computational and Mathematical Biomedical Engineering (CMBE13), December 16-18, 2013, in Hong Kong.
[6] Borazjani, I., Daghooghi2, M., Barlow, N., Innus, M., Levesque, A., Neeman, A., Jones, M. and Cornelius, C. (2011). Visualizing the wake of aquatic swimmers. In Proceedings of the 2011 companion on High Performance Computing Networking, Storage and Analysis Companion, pp. 127-128: ACM.
[5] Coffey, D., Malbraaten, N., Le, T., Borazjani, I., Sotiropoulos, F., and Keefe, D. F. (2011) A Multi-Surface, Multi-Touch Interface for OverviewDetail Exploration of Volume Datasets in Virtual Reality. In Proceedings of ACM SIGGRAPH Symposium on Interactive 3D Graphics and Games, Pages 191-198, 2011.
[4] Borazjani, I., Le, T., and Sotiropoulos, F. (2009). Hemodynamic Effects of the Orientation of a Bi-leaflet Mechanical Heart Valve Implanted in an Anatomic Aorta. In The World Congress on Medical Physics and Biomedical Engineering, September 7-12, 2009, Munich, Germany.
[3] Borazjani, I. and Sotiropoulos, F. (2009). On the Hydrodynamics of Unsteady Swimming Maneuvers. In The Fourth International Symposium on Aero Aqua Bio-Mechanisms, 29h August - 2nd September 2009, Shanghai, China.
[2] Borazjani, I. and Sotiropoulos, F. (2009). Numerical simulations of self-propelled fishlike swimming in uniform and vortical flows. In The Sixth International Symposium on Turbulence and Shear Flow Phenomena (TSFP-6), June 22-24, 2009, Seoul National University, Seoul, Korea.
[1] Borazjani, I. and Sotiropoulos, F. (2009). Direct numerical simulation of fluid-structure interaction in heart valve prosthesis in an anatomic aorta. In The Sixth International Symposium on Turbulence and Shear Flow Phenomena (TSFP-6), June 22-24, 2009, Seoul National University, Seoul, Korea.